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1

A comparative analysis of infra-red luminescence spectra of ZnSe crystals doped with Yb, Gd or Cr impurities

Colibaba, G.V., Goncearenco, E.P., Nedeoglo, D.D., Nedeoglo, N.D.

Journal:

Infrared Physics & Technology

Year:

2014

Language:

english

File:

PDF, 864 KB

english, 2014

2

Simple yet functional phosphate-loop proteins

Romero Romero, Maria Luisa, Yang, Fan, Lin, Yu-Ru, Toth-Petroczy, Agnes, Berezovsky, Igor N., Goncearenco, Alexander, Yang, Wen, Wellner, Alon, Kumar-Deshmukh, Fanindra, Sharon, Michal, Baker, David,

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

3

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

Bin-Guang Ma, Alexander Goncearenco, Igor N. Berezovsky

Journal:

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

4

Homology modeling of a voltage-gated potassium channel (human Kv7.1)

Alexandr Goncearenco, Yasmin Karimi-Nejad, Konrad Koehler

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 188 KB

english, 2007

5

From The Polymer Nature Of Proteins To The Evolution Of Protein Function

Berezovsky, Igor, Goncearenco, Alexandr

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 57 KB

english, 2009

6

Exploring the evolution of protein function in Archaea

Alexander Goncearenco, Igor N Berezovsky

Journal:

BMC Evolutionary Biology

Year:

2012

Language:

english

File:

PDF, 1.66 MB

english, 2012

7

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012

Alexander Goncearenco, Priscila Grynberg, Olga B Botvinnik…

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 105 KB

english, 2012

8

Influence of annealing medium on photoluminescence and optical properties of ZnSe:Cr crystals

Colibaba, G., Caraman, M., Evtodiev, I., Evtodiev, S., Goncearenco, E., Nedeoglo, D., Nedeoglo, N.

Journal:

Journal of Luminescence

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

9

Towards Rational Design of Protein Function

Goncearenco, Alexander, Berezovsky, Igor N.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

10

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

Berezovsky, Igor N., Ma, Bin-Guang, Goncearenco, Alexander

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 41 KB

english, 2010

11

A comparative analysis of infrared luminescence spectra of ZnSe:Yb, ZnSe:Gd, and ZnSe:Cr crystals

Colibaba, Gleb, Goncearenco, Evghenii, Nedeoglo, Dmitrii, Nedeoglo, Natalia

Journal:

Physica status solidi

Year:

2014

Language:

english

File:

PDF, 391 KB

english, 2014

12

Infrared photoluminescence of ZnSe:Gd crystals

Colibaba, G.V., Goncearenco, E.P., Nedeoglo, D.D., Nedeoglo, N.D.

Journal:

Journal of Luminescence

Year:

2015

Language:

english

File:

PDF, 472 KB

english, 2015

13

Coverage of protein domain families with structural protein–protein interactions: Current progress and future trends

Goncearenco, Alexander, Shoemaker, Benjamin A., Zhang, Dachuan, Sarychev, Alexey, Panchenko, Anna R.

Journal:

Progress in Biophysics and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

14

Obtaining of II-VI compound substrates with controlled electrical parameters and prospects of their application for nanoporous structures

Colibaba, Gleb, Goncearenco, Evghenii, Nedeoglo, Dmitrii, Nedeoglo, Natalia, Monaico, Eduard, Tiginyanu, Ion

Journal:

Physica status solidi

Year:

2014

Language:

english

File:

PDF, 547 KB

english, 2014

15

Growth of ZnCdS single crystals and prospects of their application as nanoporous structures

Colibaba, G V, Monaico, E V, Goncearenco, E P, Nedeoglo, D D, Tiginyanu, I M, Nielsch, K

Journal:

Semiconductor Science and Technology

Year:

2014

Language:

english

File:

PDF, 1.63 MB

english, 2014

16

A Dominant Negative Heterozygous G87R Mutation in the Zinc Transporter, ZnT-2 (SLC30A2), Results in Transient Neonatal Zinc Deficiency

Lasry, I., Seo, Y. A., Ityel, H., Shalva, N., Pode-Shakked, B., Glaser, F., Berman, B., Berezovsky, I., Goncearenco, A., Klar, A., Levy, J., Anikster, Y., Kelleher, S. L., Assaraf, Y. G.

Journal:

Journal of Biological Chemistry

Year:

2012

Language:

english

File:

PDF, 3.33 MB

english, 2012

17

Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins

Goncearenco, A., Berezovsky, I. N.

Journal:

Year:

2011

Language:

english

File:

PDF, 911 KB

english, 2011

18

The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins

Goncearenco, Alexander, Berezovsky, Igor N

Journal:

Year:

2014

Language:

english

File:

PDF, 3.39 MB

english, 2014

19

Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins

Goncearenco, A., Ma, B.-G., Berezovsky, I. N.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 231 KB

english, 2014

20

Protein function from its emergence to diversity in contemporary proteins

Goncearenco, Alexander, Berezovsky, Igor N

Journal:

Physical Biology

Year:

2015

Language:

english

File:

PDF, 2.73 MB

english, 2015

21

SPACER: server for predicting allosteric communication and effects of regulation

Goncearenco, A., Mitternacht, S., Yong, T., Eisenhaber, B., Eisenhaber, F., Berezovsky, I. N.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 5.73 MB

english, 2013

22

Preparation of poly( N -vinylpyrrolidone)-stabilized ZnO colloid nanoparticles

Gutul, Tatyana, Rusu, Emil, Condur, Nadejda, Ursaki, Veaceslav, Goncearenco, Evgenii, Vlazan, Paulina

Journal:

Beilstein Journal of Nanotechnology

Year:

2014

Language:

english

File:

PDF, 907 KB

english, 2014

23

Prototypes of elementary functional loops unravel evolutionary connections between protein functions

Goncearenco, A., Berezovsky, I. N.

Journal:

Year:

2010

Language:

english

File:

PDF, 819 KB

english, 2010

24

Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites

Goncearenco, Alexander, Shaytan, Alexey K., Shoemaker, Benjamin A., Panchenko, Anna R.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

25

6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations

Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 534 KB

english, 2015

26

Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions

Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

27

Nucleotide binding database NBDB – a collection of sequence motifs with specific protein-ligand interactions

Zheng, Zejun, Goncearenco, Alexander, Berezovsky, Igor N.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

28

MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions

Li, Minghui, Simonetti, Franco L., Goncearenco, Alexander, Panchenko, Anna R.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.61 MB

english, 2016

29

Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles

Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.

Journal:

Year:

2016

Language:

english

File:

PDF, 144 KB

english, 2016

30

Nucleosome Dynamics at Microsecond Timescale: DNA-Protein Interactions, Water-Mediated Interactions and Nucleosome Formation

Shaytan, Alexey K., Armeev, Grigory A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 43 KB

english, 2016

31

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

Rogozin, Igor B., Lada, Artem G., Goncearenco, Alexander, Green, Michael R., De, Subhajyoti, Nudelman, German, Panchenko, Anna R., Koonin, Eugene V., Pavlov, Youri I.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 638 KB

english, 2016

32

Exploring background mutational processes to decipher cancer genetic heterogeneity

Goncearenco, Alexander, Rager, Stephanie L., Li, Minghui, Sang, Qing-Xiang, Rogozin, Igor B., Panchenko, Anna R.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.63 MB

english, 2017

33

Mutational signatures and mutable motifs in cancer genomes

Rogozin, Igor B., Pavlov, Youri I., Goncearenco, Alexander, De, Subhajyoti, Lada, Artem G., Poliakov, Eugenia, Panchenko, Anna R., Cooper, David N.

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 865 KB

english, 2017

34

DNA polymerase η mutational signatures are found in a variety of different types of cancer

Rogozin, Igor B., Goncearenco, Alexander, Lada, Artem G., De, Subhajyoti, Nudelman, German, Panchenko, Anna R., Cooper, David N., Pavlov, Youri I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

35

Self-absorption of violet radiation in ZnO thin films produced on ZnSe crystal surfaces by isovalent substitution method

Goglidze, T.I., Dementiev, I.V., Coval, A.V., Goncearenco, E.P., Nedeoglo, N.D., Nedeoglo, D.D.

Journal:

Journal of Luminescence

Year:

2018

Language:

english

File:

PDF, 351 KB

english, 2018

36

Computational Approaches to Prioritize Cancer Driver Missense Mutations

Zhao, Feiyang, Zheng, Lei, Goncearenco, Alexander, Panchenko, Anna, Li, Minghui

Journal:

International Journal of Molecular Sciences

Year:

2018

Language:

english

File:

PDF, 484 KB

english, 2018

37

Molecular recognition of nucleosomes by binding partners

Kale, Seyit, Goncearenco, Alexander, Markov, Yaroslav, Landsman, David, Panchenko, Anna R

Journal:

Current Opinion in Structural Biology

Year:

2019

Language:

english

File:

PDF, 1.07 MB

english, 2019

38

Finding driver mutations in cancer: Elucidating the role of background mutational processes

Brown, Anna-Leigh, Li, Minghui, Goncearenco, Alexander, Panchenko, Anna R., Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.05 MB

english, 2019

39

Finding driver mutations in cancer: Elucidating the role of background mutational processes

Brown, Anna-Leigh, Li, Minghui, Goncearenco, Alexander, Panchenko, Anna R., Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.05 MB

2019

40

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

LaBarre, Brenna A., Goncearenco, Alexander, Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Hayes, Vanessa M., Elnitski, Laura

Journal:

Epigenetics & Chromatin

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

41

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

LaBarre, Brenna A., Goncearenco, Alexander, Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Hayes, Vanessa M., Elnitski, Laura

Journal:

Epigenetics & Chromatin

Year:

2019

File:

PDF, 1.20 MB

2019

42

Ag, Au and Pt decorated TiO2 biocompatible nanospheres for UV & Vis photocatalytic water treatment

Scarisoreanu, Monica, Ilie, Alina G., Goncearenco, Evghenii, Maria Banici, Ana, Morjan, Iulia P., Dutu, Elena, Tanasa, Eugenia, Fort, Ioana, Stan, Miruna, Mihailescu, Cristian N., Fleaca, Claudiu

Journal:

Applied Surface Science

Year:

2019

File:

PDF, 470 KB

2019

43

MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

Zhang, Ning, Chen, Yuting, Lu, Haoyu, Zhao, Feiyang, Alvarez, Roberto Vera, Goncearenco, Alexander, Panchenko, Anna R., Li, Minghui

Journal:

Year:

2020

Language:

english

File:

PDF, 7.12 MB

english, 2020

44

DNA methylation profiles unique to Kalahari KhoeSan individuals

Goncearenco, Alexander, LaBarre, Brenna A., Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Turner, Stephen D., Hayes, Vanessa M., Elnitski, Laura

Journal:

Year:

2020

File:

PDF, 5.65 MB

2020

45

Leveraging locus-specific epigenetic heterogeneity to improve the performance of blood-based DNA methylation biomarkers

Miller, Brendan F., Pisanic II, Thomas R., Margolin, Gennady, Petrykowska, Hanna M., Athamanolap, Pornpat, Goncearenco, Alexander, Osei-Tutu, Akosua, Annunziata, Christina M., Wang, Tza-Huei, Elnitski

Journal:

Clinical Epigenetics

Year:

2020

File:

PDF, 3.46 MB

2020

46

Human histone interaction networks: an old concept, new trends

Peng, Yunhui, Markov, Yaroslav, Goncearenco, Alexander, Landsman, David, Panchenko, Anna R.

Journal:

Journal of Molecular Biology

Year:

2020

File:

PDF, 687 KB

2020

47

Photoluminescence of ZnSe samples doped with antimony and iodine

Sushkevich, K., Goncearenco, E., Nedeoglo, N., Nedeoglo, D.

Journal:

Physica B: Condensed Matter

Year:

2020

File:

PDF, 2.98 MB

2020

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